Биологический каталог

Принципы структурной организации нуклеиновых кислот

Автор В.Зенгер

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1139. Sobell H.M., JainS.C. Stereochemistry of actinomycin binding to DNA. II. Detailed molecular model of actinomycin-DNA complex and its implications, J. Mol. Biol, 68, 21-34 (1972).

1140. Sibell H.M. Symmetry in protein-nucleic acid interaction and its genetic implications, Adv. Genet, 17, 411-490 (1973).



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1142 Wang A. H.-J., Quigley G. J., Rich A. Atomic resolution analysis of a 2:1 complex of CpG and acridine orange, Nucl. Acids Res, 6, 3879-3890 (1979).

1143. JainS.C, Tsai C.-C, Sobell H.M. Visualization of drug-nucleic acid interactions at atomic resolution. II. Structure of an ethidium/dinucleoside monophosphate crystalline complex, ethidium: 5-iodocytidylyl(3'-5')guanosine, J. Mol. Biol, 114, 317 331 (1977).

1144. SakoreT.D., Reddy B.S., Sobell H.M. Visualization of drug-nucleic acid interaction at atomic resolution. IV. Structure of an amino-acridine-dinucleoside monophosphate crystalline complex, 9-aminoacridine: 5-iodocytidylyl(3'-5')guanosine, J. Mol. Biol, 135, 763 785 (1979).

1145. Jain S.C., Bhandary K.K., Sobell H.M. Visualization of drug-nucleic acid interactions at atomic resolution. VI. Structure of two drug-dinucleoside monophosphate crystalline complexes, ellipticine-5-iodo-cytidylyl(3'-5')-guanosine and 3,5,6,8-tetramethyl-N-methyl phenanthrolinium-5-iodocytidylyl(3'-5')guanosine, J. Mol. Biol, 135, 813-840 (1979)

1146. Kuntz I.D., Jr., Kauzmann W. Hydration of proteins and polypeptides, Adv. Protein Chem, 28, 239-345 (1974).

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1151. Wolf В., Hanlon S. Structural transitions of deoxyribonucleic acid in aqueous electrolyte solutions, II. The role of hydration, Biochemistry, 14, 1661-1670 (1975).

1152 Cohen G, Eisenberg H. Deoxyribonucleate solutions: Sedimentation in a density gradient, partial specific volumes, density and refractive index measurements, and preferential interactions, Biopolymers, 6, 1077-1100 (1968).

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1154. Turn's M.-J.B., Hearst J.E. On the hydration of DNA. I. Preferential hydration and stability of DNA in concentrated trifluoracetate solution, Biopolymers, 6, 1325-1344 (1968).

1155. Tunis M.-J.B., Hearst J.E. On the hydration of DNA. II. Base composition dependence of the net hydration of DNA, Biopolymers, 6, 1345-1353 (1968).

1156. Hearst J. E. Determination of the dominant factors which influence the net hydration of native sodium deoxyribonucleate, Biopolymers, 3, 57-68 (1965).

1157. FalkM., HartmanK.A., Jr., Lord R.C. Hydration of deoxyribonucleic acid. I. A gravimetric study, J. Amer. Chem. Soc, 84, 3843 3846 (1962).

1158. Falk M, Hartman K.A., Jr., Lord R.C. Hydration of deoxyribonucleic acid. II. An infrared study. J. Amer. Chem. Soc., 85, 387-391.

1159. Falk M., Hartman K.A., Jr., Lord R.C. Hydration of deoxyribonucleic acid. III. A spectroscopic study of the effect of hydration on the structure of deoxyribonucleic acid. J. Amer. Chem. Soc, 85, 391-394 (1963).

558 Литература

1160. Falk М, Poole A. G, Goymour С. G. Infrared study of the state of water in the hydration shell of DNA, Can. J. Chem, 48, 1536 1542 (1970).

1161. North A.C.T., Rich A. X-Ray diffraction studies of bacterial viruses, Nature, 191, 1242-1245 (1961).

1162. Tunis-Schneider M.-J. В., Maestre M. F. Circular dichroism spectra of oriented and unoriented deoxyribonucleic acid films-A preliminary study, J. Mol. Biol, 52, 521-541 (1970).

1163. Bram S. The secondary structure of DNA in solution and in nucleohistone, J. Mol. Biol, 58, 277-288 (1971).

1164. Suwalsky M., Traub W. A comparative X-ray study of a nucleoprotamine and DNA complexes with polylysine and polyarginine, Biopolymers, II, 2223-2231 (1972).

1165. Minyat E.E., Ivanov V.I., Kritzyn A.M., Minchenkova L.E., Schylokina A.K. Spermine and spermidine-induced В to A transition of DNA in solution, J. Mol. Biol, 128, 397-409 (1978).

1166. Huse Y, Mitsui Y., Iitaka Y, Miyaki K. Preliminary X-ray studies of the interaction of salmon sperm DNA with spermine, J. Mol. Biol, 122, 43-53 (1978).

1167. Liquori A.M., Constantino L, Crescenzi V, Elia V, Giglio E., Puliti R.. De Santis Savino M., Vitagliamo V. Complexes between DNA and polymines: A molecular model, J. MoL Biol., 24, 113 122 (1967).

1168. Drew H.R., Dickerson R.E. Structure of a DNA dodecamer. III. Geometry of hydration, J. Mol. Biol, 151, 535-556 (1981).

1169. Lee В., Richards F.M. The interpretation of protein structures: Estimation of static accessibility, J. Mol. Biol, 55, 379 400 (1971).

1170. Chothia C. Structural invariants in protein folding, Nature, 254, 304-308 (1975).

1171. Thiyagarajan P., Ponnuswamy P. K. Solvent accessibility study on tRNAphe, Biopolymers, 18, 2233-2247 (1979).

1172 Alden C.J., Kim S.-H. Solvent-accessible surfaces of nucleic acids, J. Mol. Biol, 132, 411-434 (1979).

1173. Goldblum A., Perahia D., Pullman A. Hydration scheme of the complementary base-pairs of DNA, FEBS Lett, 91, 213 215 (1978).

1174. Pullman B. Molecular orbital approach to hydration studies of nucleic acids and proteins. In: Structure and Conformation of Nucleic Acids and Protein Nucleic Acid Interactions (M. Sundaralingam and S.T Rao, eds.), pp. 457 484, Univ. Park Press, Baltimore, 1975.

1175. Perahia D., Jhon M.S., Pullman В. Theoretical study of the hydration of B-DNA, Biochim. Biophys. Acta, 474, 349-362 (1977).

1176. Kim K., Jhon S. Theoretical study of hydration of RNA, Biochim. Biophys. Acta, 565, 131 147 (1979).

1177. Clemehti E., Corongiu G. Interaction of water with DNA single helix in the A conformation, Biopolymers, 18, 2431-2450 (1979).

1178. Clementi E., Corongiu G. A theoretical study on the water structure for nucleic acids bases and base pairs in solution at T = 300 K, J. Chem. Phys, 72, 3979-3992 (1980).

1179. Clementi ?, Corongiu G. Interaction of water with DNA single and double helix in the A and В conformation, Gazz. Chim. Ital, 109, 201-205 (1979).

1180. Gorongiu G, Clementi E. Simulations of the solvent structure for macromolecules. I. Solvation of B-DNA double helix at T = 300 K, Biopolymers, 20, 551-571 (1981).

1181. Jacobson B. On the interpretation of dielectric constants of aqueous



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1182. Klotz l.M. Ят1е of water structure in macromolecules, Fed. Proc, 24, S-24-S-33 (1965).

1183. Jeffrey G.A. Water structure in organic hydrates, Acc. Chem. Res, 2, 344-352 (1969).

1183a.Xopfca M.L., Fratini A. V, Drew H.R., Dickerson R.E. Ordered water structure around a B-DNA dodecamer, A quantitative study, J. Mol. Biol, 163, 129-146 (1982).

1184. Neidle S, Berman H.M., Shieh H.S. Highly structured water network in crystals of a deoxynucleoside-drug complex, Nature, 288, 129-133 (1980).

1185. Saenger W. Circular hydrogen bonds, Nature, 279, 343 344 (1979).

1186. Saenger W., Lindner К. OH clusters with homodromic circular arrangement of hydrogen bonds, Angew, Chem. Int. Ed. Engl, 19, 398-399 (1979).

1187. Lesyng В., Saenger W. Theoretical investigations on circular and chain-like hydrogen bonded structures found in two crystal forms of a-cyclodextrin hexahydrate, Biochim. Biophys. Acta, 678, 408-413 (1981).

1188. Saenger W., Betzel Ch, Hingerty В., Brown G.M. Filp-flop О—H---H—О hydrogen bonds in partially disordered systems, Nature, 296, 581-583 (1982).

1189. Young T.-S., Kim S.-H., Modrich P., Beth A., Jay E. Preliminary X-ray diffraction studies of EcoRI restriction endonuclease DNA complex, J. MoL Biol, 145, 607-610 (1981).

1190. McPherson A., Jurnak F, Wang A., Kolpak F., Rich A. The structure of a DNA unwinding protein and its complexes with oligodeoxynucleotides by X-ray diffraction, Biophys. J, 32, 155-173 (1980).

H90a.Braver G. D., McPherson A. Refined structure of the gene 5 DNA binding protein from bacteriophage fd, J. Mol. Biol, submited for publication, 1983.

1191. Giege R., Lorber В., Ebel J.-P., Moras D., Thierry J.-C. Cristallisation du complexe forme entre l'aspartate tRNA de levure et son aminoacyl-tRNA synthetase specifique, Compt. Rend. Acad. Sci. Paris, Ser. D, 291, 393-396 (1980).

1192 Hippel P.H. von, McGhee J.D. DNA-protein interactions, Annu. Rev. Biochem, 41, 231-300 (1972).

1193. Sundaralingam M, Rao S. T. (eds). Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions, Univ. Park Press, Baltimore, 1975.

1194. Vogel H.J. (ed.). Nucleic Acid-Protein Recognition, Academic Press, New York, 1977.

1195. Helene C, Maurizot J.-C. Interactions of oligopeptides with nucleic acids, CRC Crit. Rev Biochem, 10, 213-258 (1981).

1196. Lancelot G, Mayer R, Helene C. Conformational study of the dipeptide arginy-lglutamic acid and of its complex with nucleic bases, J. Amer. Chem. Soc, 101, 1569-1576 (1979).

1197. Брусков В. И., Бушуев В. Н. Исследование методом протонного магнитного резонанса комплексообразования между нуклеозидами и соединениями, моделирующими аминокислотные остатки белков, в диметилсульфоксиде. Биофизика, 1977, 22, 26-31.

1197&.Lancelot G, Mayer R. The specific interaction of guanine with carboxylate ions in water, FEBS Lett, 130, 7-11 (1981).

1198. Bruskov V. Specificity of interaction of nucleic acid bases with hydrogen bond forming amino acids, Stud. Biophys. (Berlin), 67, S. 43-44 and microfiche 2/27-34 (1978).

560 Литература

1199. Lancelot G, НеЛёпе С. Selective recognition of nucleic acids by proteins: The specificity of guanine interaction with carboxylic acids, Proc. Nat. Acad. Sci USA, 74, 4872-4875 (1977).

1200. Sellini H, Maurizot J.-C, Dimicoli J.L., Helene C. Hydrogen bonding of amino acid side chains to nucleic acid bases, FEBS Lett, 30, 219-224 (1973).

1201. Lancelot G. Hydrogen bonding of adenine derivatives to tyrosine side chains, Biophys. J, 17, 243-254 (1977).

1202. Gresh N., Pullman B. A theoretical study of the interaction of guanine and cytosine with specific amino acid side chains, Biochim. Biophys. Acta, 608, 47-53 (1980).

1203. Брусков В. И. Об узнавании оснований нуклеиновых кислот аминокислотами и пептидами с помощью водородных связей. Молек. биол, 1975, 9, 34-39.

1204. Seeman N. С, Rosenberg J. М, Rich A. Sequence-specific recognition of double helical nucleic acids by proteins, Proc. Nat. Acad. Sci. USA, 73, 804-808 (1976).

1205. Rich A., Seeman N. C, Rosenberg J. M. Protein recognition of base-pairs in a double helix. In: Nucleic Acid-Protein Recognition (H.J. Vogel, ed.), pp. 361-374, Academic Press, New York, 1977.

1206. Rein R, Garduno R, Egan J. Т., Columbano S., Coeckelenbergh Y, Macelroy R.D. Elements of a DNA-polypeptide recongition code: Electrostatic potential around the double helix, and a stereospecific model for purine recognition, Biosystems, 9, 131-137 (1977).

1207. Chothia C. Conformation of twisted P-pleated sheets in proteins, J. Mol. Biol, 75, 295-302 (1973).

1208. Church G. M, Sussman J. L, Kim S.-H. Secondary structural complementarity between DNA and proteins, Proc. Natl. Acad. Sci. USA, 74, 1458-1462 (1977).

1209. Chou P. J, Adler A. J., Fasman G. D. Conformational prediction and circular dichroism studies on the lac repressor, J. Mol. Biol, 96, 29-45 (1975).

l209a.Ribeiro A. A., Wemmer D., Bray R. P., Jardetsky O. A folded structure for the lac-repressor headpiece, Biochem Biophys. Res. Commun., 99, 668-674 (1981).

1210. Gursky G.V., Tumanyan V.G., Zasedatelev A.S., Zhuse A.L., Grokhovsky S.L, Gottikh B. R. A code controlling specific binding of proteins to double-helical DNA and RNA, In: Nucleic Acid-Protein Recognition (H. J. Vogel, ed.) pp. 189-217, Academic Press, New York, 1977.

1211. Sobell H.M. Symmetry in nucleic acid structure and its role in protein-nucleic acid interactions, Annu. Rev. Biophys. Bioeng, 5, 307-335 (1976).

1212. Tamura C, Yoshikama M, Sato S, Hata T. Crystal structure of cytidine-salicylic acid complex, Chem. Lett. (Japan), 1221-1224, 1973.

1213. Hata Т., Yoshikawa M, Sato S, Tamura С. 1:1 Cytidine-N-carbobenzoxyg-lutamic acid dihydrate, Acta Crystallogr, B, 31, 312-314 (1975).

1214. Ohki M, Takenaka A., Shimanouchi H., Sasada Y. Complexes between nucleotide base and amino acid. IV. Crystal and molecular structure of cytosine: N,N,-Phthaloyl-DL-glutamic acid complex dihydrate, Bull. Chem. Soc. Japan, 53, 2724-2730 (1980).

1215. Ohki M, Takenaka A., Shimanouchi H, Sasada Y. Complexes between nucleotide base and amino acid. II. Crystal structure of 5-bromocytosine: N-tosyl-L-glutamic acid, Bull. Chem. Soc. Japan, 49, 3493-3497 (1976).

1216. Ohki M., Takenaka A., Shimanouchi H., Sasada Y. Complexes between nucleotide base and amino acid. III. Crystal structure of 5-bromocytosine: phthaloyl-DL-glutamic acid complex hemihydrate, Bull. Chem. Soc. Japan, 50, 90-96 (1977).



1217. Suck D., Saenger W., Rohde W. X-Ray structure of thymidine-5'-carboxylic acid, an inhibitor of thymidine and thymidylate kinase: Preferred nucleobase-carboxylic acid hydrogen bonding scheme, Biochim. Biophys. Acta, 361, 1-10 (1974).

1218. Narayanan P., Berman H.M., Rousseau R. Model compounds for protein nucleic acid interactions: 3. Synthesis and structure of a nucleoside dipeptide, N-(9-P-D-ribofuranosylpurin-6-yl) glycyl-L-alanine sesquihydrate, J. Amer. Chem. Soc, 98, 8472-8475 (1976).

1219. Kaneda T, Tanaka J. The crystal structure of the intermolecular complex between 9-ethyladenine and indole, Bull. Chem. Soc. Japan, 49, 1799-1804 (1976).

1220. Ohki M, Takenaka A., Shimanouchi H, Sasada Y. 3-(9-Adenyl) propionyltryptamine monohydrate, Acta Crystallogr, B, 33, 2954-2956 (1977).

1221. Ohki M, Takenaka A., Shimanouchi H., Sasada Y. Crystal and molecular structure of 3-(adenin-9-yl)propiontryptamide, Bull. Chem. Soc. Japan, 50, 2573-2578 (1977).

1222. Morita F. Molecular complex of tryptophan with ATP or its analogs, Biochim, Biophys. Acta, 343, 674-681 (1974).

1223. Herriott J. R, Cornerman A., Deranleau D. D. Crystal struc

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